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One or more keywords matched the following items that are connected to Dinner, Aaron
Item TypeName
Concept Models, Molecular
Academic Article CHARMM: the biomolecular simulation program.
Academic Article Polymerization of MIP-1 chemokine (CCL3 and CCL4) and clearance of MIP-1 by insulin-degrading enzyme.
Academic Article The Pseudomonas aeruginosa multidrug efflux regulator MexR uses an oxidation-sensing mechanism.
Academic Article Using multiscale preconditioning to accelerate the convergence of iterative molecular calculations.
Academic Article Duplex interrogation by a direct DNA repair protein in search of base damage.
Academic Article A metastable state in folding simulations of a protein model.
Academic Article Understanding beta-hairpin formation.
Academic Article Elastic energy storage in beta-sheets with application to F1-ATPase.
Academic Article Grand canonical Monte Carlo simulations of water in protein environments.
Academic Article One of two unstructured domains of Ii becomes ordered in complexes with MHC class II molecules.
Academic Article Enhancement of diffusion-controlled reaction rates by surface-induced orientational restriction.
Academic Article Conformational sampling via a self-regulating effective energy surface.
Academic Article Understanding protein folding via free-energy surfaces from theory and experiment.
Academic Article Automatic method for identifying reaction coordinates in complex systems.
Academic Article Molecular dynamics simulations of nucleotide release from the circadian clock protein KaiC reveal atomic-resolution functional insights.
Academic Article Atomistic understanding of kinetic pathways for single base-pair binding and unbinding in DNA.
Academic Article Monte Carlo simulations of biomolecules: The MC module in CHARMM.
Academic Article Dynamic coupling between coordinates in a model for biomolecular isomerization.
Academic Article Cooperative recruitment of Yan via a high-affinity ETS supersite organizes repression to confer specificity and robustness to cardiac cell fate specification.
Academic Article Implications of alternative substrate binding modes for catalysis by uracil-DNA glycosylase: an apparent discrepancy resolved.
Academic Article Apparent directional scanning for DNA repair.
Academic Article Models of single-molecule experiments with periodic perturbations reveal hidden dynamics in RNA folding.
Academic Article Delineation of folding pathways of a ß-sheet miniprotein.
Academic Article Uracil-DNA glycosylase acts by substrate autocatalysis.
Academic Article Bayesian modeling reveals metabolite-dependent ultrasensitivity in the cyanobacterial circadian clock.
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  • Models Molecular