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Dinner, Aaron
One or more keywords matched the following items that are connected to
Dinner, Aaron
Item Type
Name
Concept
Models, Molecular
Academic Article
CHARMM: the biomolecular simulation program.
Academic Article
Polymerization of MIP-1 chemokine (CCL3 and CCL4) and clearance of MIP-1 by insulin-degrading enzyme.
Academic Article
The Pseudomonas aeruginosa multidrug efflux regulator MexR uses an oxidation-sensing mechanism.
Academic Article
Using multiscale preconditioning to accelerate the convergence of iterative molecular calculations.
Academic Article
Duplex interrogation by a direct DNA repair protein in search of base damage.
Academic Article
A metastable state in folding simulations of a protein model.
Academic Article
Understanding beta-hairpin formation.
Academic Article
Elastic energy storage in beta-sheets with application to F1-ATPase.
Academic Article
Grand canonical Monte Carlo simulations of water in protein environments.
Academic Article
One of two unstructured domains of Ii becomes ordered in complexes with MHC class II molecules.
Academic Article
Enhancement of diffusion-controlled reaction rates by surface-induced orientational restriction.
Academic Article
Conformational sampling via a self-regulating effective energy surface.
Academic Article
Understanding protein folding via free-energy surfaces from theory and experiment.
Academic Article
Automatic method for identifying reaction coordinates in complex systems.
Academic Article
Molecular dynamics simulations of nucleotide release from the circadian clock protein KaiC reveal atomic-resolution functional insights.
Academic Article
Atomistic understanding of kinetic pathways for single base-pair binding and unbinding in DNA.
Academic Article
Monte Carlo simulations of biomolecules: The MC module in CHARMM.
Academic Article
Dynamic coupling between coordinates in a model for biomolecular isomerization.
Academic Article
Cooperative recruitment of Yan via a high-affinity ETS supersite organizes repression to confer specificity and robustness to cardiac cell fate specification.
Academic Article
Implications of alternative substrate binding modes for catalysis by uracil-DNA glycosylase: an apparent discrepancy resolved.
Academic Article
Apparent directional scanning for DNA repair.
Academic Article
Models of single-molecule experiments with periodic perturbations reveal hidden dynamics in RNA folding.
Academic Article
Delineation of folding pathways of a ß-sheet miniprotein.
Academic Article
Uracil-DNA glycosylase acts by substrate autocatalysis.
Academic Article
Bayesian modeling reveals metabolite-dependent ultrasensitivity in the cyanobacterial circadian clock.
Search Criteria
Models Molecular